Lab Protocols

Chlorophyll

  • Measure chlorophyll-a and pheophytin-a by Turner Designs (YY Hu, 2025) protocols.io

Silicate

Phosphate

  • An X-HTDC method for estimating particulate phosphorus from microalgae (YY Hu, ZF Finkel, 2022) 10.17504/protocols.io.kqdg35dq7v25/v6
  • Inorganic polyphosphate in microalgae: A DAPI-based quantification in microtiter plate (YY Hu, ZV Finkel, 2022) protocols.io
  • Extraction and measurement of polyphosphate and inorganic phosphorus from microalgae samples (YY Hu, ZV Finkel, 2025) 10.17504/protocols.io.q26g7pzdqgwz/v1
  • DAPI-Based Polyphosphate Estimation with Extraction Sufficiency Validation: A Method for Quantifying Polyphosphate from Microalgae Samples (YY Hu, ZV Finkel, 2023) 10.17504/protocols.io.ewov1ox87lr2/v1

Carbohydrate

Lipid

Protein

Nucleic acids

Datasets

Stoichiometry

  • RM Sheward, JD Liefer, AJ Irwin, ZV Finkel (2023) The Emiliania hyxleyi stoichiometry database. 10.5281/zenodo.7594880

Effects of oil on phytoplankton

  • Eukaryotic community response to oil and Corexit in a coastal water mesocosm, (Mesocosm 1, August 2015.) Eukaryote RNA sequencing on GRIIDC UDI R4.x263.189:0010 and doi 10.7266/n7-kvpb-0878
  • Eukaryotic community response to oil and Corexit in a mesocosm, (COAST, Mesocosm 2, October 2015.) Eukaryote RNA sequencing on GRIIDC UDI R4.x263.189:0011 and doi 10.7266/n7-43q9-xq06
  • Metatranscriptome analysis of COAST mesocosm on GRIIDC UDI R6.x807.000:0072 and doi 10.7266/2JWNDY5F
  • Eukaryotic phytoplankton community composition in the COAST (Gulf of Mexico, COASTal water mesocosms amended with coastal microbial concentrate) mesocosm as identified by 18S sequence from RNA-seq whole transcriptome sequencing for four treatments (control, WAF, CEWAF, dilute CEWAF). 18S rRNA sequences for Mesocosm 2 data on GRIIDC UDI R6.x807.000:0040 and doi 10.7266/032DBZJY
  • Sensitivity index for phytoplankton on figshare 10.6084/m9.figshare.8766389.v1
  • Percent relative abundance of the eukaryotic microbial community in the GOMCOAST (Gulf of Mexico, Coastal Water, mesocosm 4) mesocosm. Eukaryote RNA sequencing for Mesocosm 4 on GRIIDC UDI R4.x263.000:0042 doi 10.7266/N7JD4V8Z
  • Physiological responses of marine phytoplankton exposed to oil and Corexit in culture experiments. Results from exposure experiments with six different microalgae species. Data on GRIIDC UDI R6.x807.000:0014 doi 10.7266/n7-jehv-5771
  • Response of toxigenic Pseudo-nitzschia sp. to oil and dispersant exposure over 6 days. Results from exposure experiment on Pseudo-nitzschia sp. Data on GRIIDC UDI R6.x807.000:0035 doi 10.7266/n7-qpqz-hn88
  • NCBI BioProject PRJNA489497.

Chaetocerous affinis transcriptome

Macromolecules

Evolution

Niches

Theses

  • Kevan Merrow, M.Sc. Oceanography DalSpace
  • Mohammad Amirian, Ph.D. Statistics DalSpace
  • Nuwanthis Samarasinghe, Ph.D. Oceanography DalSpace
  • Brian Beardsall, M.Sc. Computational Biology and Bioinformatics
  • Jonathan Bradet-Legris, M.Sc. Statistics DalSpace